PH01003210G0060's details annotation
1.Annotation
ICBR annotation: inositol-1-monophosphatase, putative, expressed
Blast result AT5G63980 : 7.00E-118
Blast annotation: Inositol monophosphatase family protein
2.Location
Scaffold: PH01003210
Strand: -
| Region | Start | End |
| gene | 39613 | 43525 |
| mRNA | 39613 | 43525 |
| exon | 39613 | 39937 |
| exon | 40024 | 40177 |
| exon | 40260 | 40358 |
| exon | 40468 | 40678 |
| exon | 41453 | 41491 |
| exon | 41791 | 41993 |
| exon | 42083 | 42159 |
| exon | 42437 | 42512 |
| exon | 43071 | 43525 |
| CDS | 39765 | 39937 |
| CDS | 40024 | 40177 |
| CDS | 40260 | 40358 |
| CDS | 40468 | 40678 |
| CDS | 41453 | 41491 |
| CDS | 41791 | 41993 |
| CDS | 42083 | 42159 |
| CDS | 42437 | 42512 |
| CDS | 43071 | 43154 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001366 | sulfur compound metabolic process, endoplasmic reticulum, phosphatidylinositol phosphorylation, 3'(2'),5'-bisphosphate nucleotidase activity, RLK-Pelle_DLSV (from iTAK) Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism Sulfur_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00459.24 | Inositol_P | 44 | 361 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Inositol phosphate metabolism | 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase | ko00562 | K15422 |
| Sulfur metabolism | 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase | ko00920 | K15422 |
| Phosphatidylinositol signaling system | 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase | ko04070 | K15422 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006790 | sulfur compound metabolic process |
| GO:0008441 | 3'(2'),5'-bisphosphate nucleotidase activity |
| GO:0046854 | phosphatidylinositol phosphorylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.