PH01003210G0230's details annotation
1.Annotation
ICBR annotation: cell division cycle protein 48, putative, expressed
Blast result AT3G53230 : 2.20E-32
Blast annotation: ATPase, AAA-type, CDC48 protein
2.Location
Scaffold: PH01003210
Strand: -
| Region | Start | End |
| gene | 139702 | 145707 |
| mRNA | 139702 | 145707 |
| exon | 139702 | 140941 |
| exon | 142468 | 142599 |
| exon | 143827 | 143939 |
| exon | 144721 | 145707 |
| CDS | 140714 | 140941 |
| CDS | 142468 | 142599 |
| CDS | 143827 | 143939 |
| CDS | 144721 | 145048 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00004.28 | AAA | 69 | 111 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.