PH01003211G0130's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme, putative, expressed
Blast result AT4G36800 : 1.60E-68
Blast annotation: RUB1 conjugating enzyme 1
2.Location
Scaffold: PH01003211
Strand: -
| Region | Start | End |
| gene | 85947 | 91595 |
| mRNA | 85947 | 91595 |
| exon | 85947 | 86767 |
| exon | 89123 | 89158 |
| exon | 89291 | 89407 |
| exon | 89510 | 89588 |
| exon | 89987 | 90095 |
| exon | 90841 | 91595 |
| CDS | 86630 | 86767 |
| CDS | 89123 | 89158 |
| CDS | 89291 | 89407 |
| CDS | 89510 | 89588 |
| CDS | 89987 | 90095 |
| CDS | 90841 | 90919 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000508 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Tropane,_piperidine_and_pyridine_alkaloid_biosynthesis CAMK_CDPK (from iTAK) Novobiocin_biosynthesis Isoquinoline_alkaloid_biosynthesis Tyrosine_metabolism Ubiquinone_and_other_terpenoid-quinone_biosynthesis Cysteine_and_methionine_metabolism Phenylalanine_metabolism cellular amino acid metabolic process, |
| coexpression network | CFinderM000701 | nucleotide kinase activity, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor, nucleobase-containing compound kinase activity, |
| coexpression network | CFinderM001184 | CAMK_CDPK (from iTAK) |
| coexpression network | CFinderM001455 | Amino_sugar_and_nucleotide_sugar_metabolism CAMK_CDPK (from iTAK) carbohydrate phosphorylation, mitochondrial electron transport, ubiquinol to cytochrome c, galactose metabolic process, ubiquinol-cytochrome-c reductase activity, galactokinase activity, |
| coexpression network | CFinderM001551 | carbohydrate phosphorylation, galactokinase activity, galactose metabolic process, kinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 40 | 170 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 M [EC:6.3.2.19] | ko04120 | K10579 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.