PH01003215G0050's details annotation
1.Annotation
ICBR annotation: CBS domain containing membrane protein, putative, expressed
Blast result AT1G09020 : 1.00E-29
Blast annotation: homolog of yeast sucrose nonfermenting 4
2.Location
Scaffold: PH01003215
Strand: +
| Region | Start | End |
| gene | 24649 | 30036 |
| mRNA | 24649 | 30036 |
| exon | 24649 | 25472 |
| exon | 25781 | 25928 |
| exon | 26038 | 26154 |
| exon | 26229 | 26288 |
| exon | 26728 | 26817 |
| exon | 27636 | 27782 |
| exon | 27869 | 27973 |
| exon | 28176 | 28202 |
| exon | 28975 | 29008 |
| exon | 29824 | 29922 |
| exon | 29953 | 30036 |
| CDS | 25381 | 25472 |
| CDS | 25781 | 25928 |
| CDS | 26038 | 26154 |
| CDS | 26229 | 26288 |
| CDS | 26728 | 26817 |
| CDS | 27636 | 27782 |
| CDS | 27869 | 27973 |
| CDS | 28176 | 28202 |
| CDS | 28975 | 29008 |
| CDS | 29824 | 29922 |
| CDS | 29953 | 29996 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001092 | CBM20 Carbohydrate-Binding_Modules GH77 Glycoside_Hydrolases membrane coat, 4-alpha-glucanotransferase activity, starch_binding |
| coexpression network | CFinderM001302 | membrane coat, malic enzyme activity, malate_dehydrogenase_(decarboxylating)_(NAD+)_activity malate metabolic process, |
| coexpression network | CFinderM001528 | SNARE_interactions_in_vesicular_transport SNAP receptor activity, Phagosome |
| coexpression network | CFinderM001714 | phosphatidylinositol_dephosphorylation Ribosome_biogenesis_in_eukaryotes RNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.