PH01003219G0040's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT2G05160 : 6.70E-66
Blast annotation: CCCH-type zinc fingerfamily protein with RNA-binding domain
2.Location
Scaffold: PH01003219
Strand: +
| Region | Start | End |
| gene | 22812 | 25277 |
| mRNA | 22812 | 25277 |
| exon | 22812 | 23407 |
| exon | 23527 | 23874 |
| exon | 23967 | 24137 |
| exon | 24262 | 24346 |
| exon | 24520 | 24616 |
| exon | 24704 | 24874 |
| exon | 24963 | 25077 |
| exon | 25185 | 25277 |
| CDS | 22938 | 23407 |
| CDS | 23527 | 23874 |
| CDS | 23967 | 24137 |
| CDS | 24262 | 24346 |
| CDS | 24520 | 24616 |
| CDS | 24704 | 24874 |
| CDS | 24963 | 25077 |
| CDS | 25185 | 25263 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12872.6 | OST-HTH | 201 | 279 |
| PF00076.21 | RRM_1 | 319 | 357 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.