PH01003222G0290's details annotation
1.Annotation
ICBR annotation: transcription factor IIA large subunit, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01003222
Strand: +
| Region | Start | End |
| gene | 154411 | 164729 |
| mRNA | 154411 | 164729 |
| exon | 154411 | 155406 |
| exon | 155584 | 155733 |
| exon | 156536 | 156595 |
| exon | 157280 | 157363 |
| exon | 158601 | 158858 |
| exon | 162557 | 162724 |
| exon | 163245 | 163307 |
| exon | 163724 | 163801 |
| exon | 164053 | 164729 |
| CDS | 155269 | 155406 |
| CDS | 155584 | 155733 |
| CDS | 156536 | 156595 |
| CDS | 157280 | 157363 |
| CDS | 158601 | 158858 |
| CDS | 162557 | 162724 |
| CDS | 163245 | 163307 |
| CDS | 163724 | 163801 |
| CDS | 164053 | 164064 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000820 | poly(ADP-ribose) glycohydrolase activity, galactonolactone_dehydrogenase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.