PH01003232G0140's details annotation
1.Annotation
ICBR annotation: phospholipid-transporting ATPase, putative, expressed
Blast result AT1G68710 : 0
Blast annotation: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
2.Location
Scaffold: PH01003232
Strand: -
| Region | Start | End |
| gene | 82218 | 89498 |
| mRNA | 82218 | 89498 |
| exon | 82218 | 82726 |
| exon | 82801 | 82915 |
| exon | 83405 | 83595 |
| exon | 83751 | 83942 |
| exon | 84033 | 84131 |
| exon | 84255 | 84380 |
| exon | 84519 | 84725 |
| exon | 85021 | 85129 |
| exon | 85220 | 85308 |
| exon | 85396 | 85672 |
| exon | 85794 | 85904 |
| exon | 85997 | 87327 |
| exon | 88081 | 89498 |
| CDS | 82523 | 82726 |
| CDS | 82801 | 82915 |
| CDS | 83405 | 83595 |
| CDS | 83751 | 83942 |
| CDS | 84033 | 84131 |
| CDS | 84255 | 84380 |
| CDS | 84519 | 84725 |
| CDS | 85021 | 85129 |
| CDS | 85220 | 85308 |
| CDS | 85396 | 85672 |
| CDS | 85794 | 85904 |
| CDS | 85997 | 87327 |
| CDS | 88081 | 88512 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16209.4 | PhoLip_ATPase_N | 55 | 114 |
| PF00122.19 | E1-E2_ATPase | 149 | 359 |
| PF13246.5 | Cation_ATPase | 545 | 632 |
| PF16212.4 | PhoLip_ATPase_C | 896 | 1093 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0000287 | magnesium ion binding |
| GO:0004012 | phospholipid-translocating ATPase activity |
| GO:0005524 | ATP binding |
| GO:0006812 | cation transport |
| GO:0015914 | phospholipid transport |
| GO:0016021 | integral to membrane |
| GO:0019829 | cation-transporting ATPase activity |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.