PH01003236G0020's details annotation
1.Annotation
ICBR annotation: MYB transcription factor, putative, expressed
Blast result AT5G52660 : 2.00E-67
Blast annotation: Homeodomain-like superfamily protein
2.Location
Scaffold: PH01003236
Strand: +
| Region | Start | End |
| gene | 12470 | 22329 |
| mRNA | 12470 | 22329 |
| exon | 12470 | 14358 |
| exon | 15645 | 15702 |
| exon | 16300 | 16423 |
| exon | 16511 | 16672 |
| exon | 16755 | 16871 |
| exon | 18553 | 18674 |
| exon | 19302 | 19361 |
| exon | 20907 | 22329 |
| CDS | 14171 | 14358 |
| CDS | 15645 | 15702 |
| CDS | 16300 | 16423 |
| CDS | 16511 | 16672 |
| CDS | 16755 | 16871 |
| CDS | 18553 | 18674 |
| CDS | 19302 | 19361 |
| CDS | 20907 | 21008 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 46 | 90 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.