PH01003239G0190's details annotation
1.Annotation
ICBR annotation: vacuolar protein sorting-associated protein 11, putative, expressed
Blast result AT2G05170 : 0.00E+00
Blast annotation: vacuolar protein sorting 11
2.Location
Scaffold: PH01003239
Strand: -
| Region | Start | End |
| gene | 94316 | 100342 |
| mRNA | 94316 | 100342 |
| exon | 94316 | 95235 |
| exon | 96173 | 96226 |
| exon | 96284 | 98062 |
| exon | 98670 | 98993 |
| exon | 99123 | 99296 |
| exon | 99649 | 99820 |
| exon | 99864 | 100342 |
| CDS | 94879 | 95235 |
| CDS | 96173 | 96226 |
| CDS | 96284 | 98062 |
| CDS | 98670 | 98993 |
| CDS | 99123 | 99296 |
| CDS | 99649 | 99820 |
| CDS | 99864 | 100093 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001763 | protein phosphatase type 2A complex, CMGC_MAPK (from iTAK) mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00637.19 | Clathrin | 460 | 577 |
| PF12451.7 | VPS11_C | 976 | 1018 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0006886 | intracellular protein transport |
| GO:0008270 | zinc ion binding |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.