PH01003243G0030's details annotation
1.Annotation
ICBR annotation: HIT zinc finger domain containing protein, expressed
Blast result AT5G37055 : 1.40E-49
Blast annotation: HIT-type Zinc finger family protein
2.Location
Scaffold: PH01003243
Strand: +
| Region | Start | End |
| gene | 14613 | 17804 |
| mRNA | 14613 | 17804 |
| exon | 14613 | 15439 |
| exon | 16475 | 16577 |
| exon | 17255 | 17358 |
| exon | 17470 | 17804 |
| CDS | 15329 | 15439 |
| CDS | 16475 | 16577 |
| CDS | 17255 | 17358 |
| CDS | 17470 | 17673 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001039 | acetyl-CoA carboxylase activity, biotin_carboxylase_activity Fatty_acid_biosynthesis Propanoate_metabolism Pyruvate_metabolism cytokinesis microtubule cytoskeleton organization, ligase activity, microtubule binding, |
| coexpression network | CFinderM001109 | RLK-Pelle_LRR-VI-2 (from iTAK) regulation of Rab GTPase activity, Spliceosome |
| coexpression network | CFinderM001805 | Golgi vesicle transport, vesicle-mediated transport, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04438.15 | zf-HIT | 132 | 160 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.