PH01003249G0180's details annotation
1.Annotation
ICBR annotation: zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Blast result AT5G16540 : 1.20E-46
Blast annotation: zinc finger nuclease 3
2.Location
Scaffold: PH01003249
Strand: +
| Region | Start | End |
| gene | 134944 | 138856 |
| mRNA | 134944 | 138856 |
| exon | 134944 | 136353 |
| exon | 137352 | 138856 |
| CDS | 136030 | 136353 |
| CDS | 137352 | 137621 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001134 | Lysine_biosynthesis regulation of translational initiation, eukaryotic translation initiation factor 3 complex, spliceosomal complex, Ribosome |
| coexpression network | CFinderM001592 | DNA_ligation_involved_in_DNA_repair DNA_ligase_activity DNA ligase (ATP) activity, regulation_of_cell_cycle DNA recombination, C3H Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) SNF2 Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity Mismatch_repair Base_excision_repair Nucleotide_excision_repair DNA_replication DNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
| Transcription_Regulator(from PlantTFDB) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00642.23 | zf-CCCH | 63 | 88 |
| PF00642.23 | zf-CCCH | 109 | 134 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.