PH01003251G0130's details annotation
1.Annotation
ICBR annotation: E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed
Blast result AT3G61600 : 1.00E-171
Blast annotation: POZ/BTB containin G-protein 1
2.Location
Scaffold: PH01003251
Strand: -
| Region | Start | End |
| gene | 96623 | 102203 |
| mRNA | 96623 | 102203 |
| exon | 96623 | 98578 |
| exon | 98689 | 98995 |
| exon | 99335 | 99398 |
| exon | 99489 | 99607 |
| exon | 100712 | 102203 |
| CDS | 97768 | 98578 |
| CDS | 98689 | 98995 |
| CDS | 99335 | 99398 |
| CDS | 99489 | 99607 |
| CDS | 100712 | 100829 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001450 | tRNA processing, |
| coexpression network | CFinderM001481 | |
| coexpression network | CFinderM001482 | Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00651.30 | BTB | 61 | 160 |
| PF07707.14 | BACK | 180 | 276 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.