PH01003272G0030's details annotation
1.Annotation
ICBR annotation: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed
Blast result AT1G17720 : 7.00E-174
Blast annotation: Protein phosphatase 2A, regulatory subunit PR55
2.Location
Scaffold: PH01003272
Strand: -
| Region | Start | End |
| gene | 17440 | 25110 |
| mRNA | 17440 | 25110 |
| exon | 17440 | 18401 |
| exon | 18498 | 18565 |
| exon | 18892 | 18969 |
| exon | 19065 | 19156 |
| exon | 19243 | 19311 |
| exon | 20134 | 20261 |
| exon | 21824 | 21942 |
| exon | 22139 | 22251 |
| exon | 22366 | 22375 |
| exon | 22667 | 22758 |
| exon | 22952 | 23152 |
| exon | 23592 | 23711 |
| exon | 23993 | 24103 |
| exon | 24164 | 24267 |
| exon | 25007 | 25110 |
| CDS | 18265 | 18401 |
| CDS | 18498 | 18565 |
| CDS | 18892 | 18969 |
| CDS | 19065 | 19156 |
| CDS | 19243 | 19311 |
| CDS | 20134 | 20261 |
| CDS | 21824 | 21942 |
| CDS | 22139 | 22251 |
| CDS | 22366 | 22375 |
| CDS | 22667 | 22758 |
| CDS | 22952 | 23152 |
| CDS | 23592 | 23711 |
| CDS | 23993 | 24103 |
| CDS | 24164 | 24267 |
| CDS | 25007 | 25031 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001034 | STE_STE20-YSK (from iTAK) protein phosphatase type 2A complex, glycolipid_6-alpha-mannosyltransferase_activity GDP-Man:Man1GlcNAc2-PP-Dol_alpha-1,3-mannosyltransferase_activity C3H Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001518 | SNARE_interactions_in_vesicular_transport protein phosphatase type 2A complex, SNAP receptor activity, protein phosphatase type 2A regulator activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000159 | protein phosphatase type 2A complex |
| GO:0005515 | protein binding |
| GO:0007165 | signal transduction |
| GO:0008601 | protein phosphatase type 2A regulator activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.