PH01003280G0040's details annotation
1.Annotation
ICBR annotation: cysteine synthase, chloroplast/chromoplast precursor, putative, expressed
Blast result AT3G61440 : 9.10E-94
Blast annotation: cysteine synthase C1
2.Location
Scaffold: PH01003280
Strand: +
| Region | Start | End |
| gene | 34117 | 38441 |
| mRNA | 34117 | 38441 |
| exon | 34117 | 34996 |
| exon | 36031 | 36088 |
| exon | 36434 | 36501 |
| exon | 36981 | 37140 |
| exon | 37371 | 37421 |
| exon | 37554 | 37605 |
| exon | 37697 | 37767 |
| exon | 37855 | 37914 |
| exon | 38134 | 38214 |
| exon | 38286 | 38441 |
| CDS | 34632 | 34996 |
| CDS | 36031 | 36088 |
| CDS | 36434 | 36501 |
| CDS | 36981 | 37140 |
| CDS | 37371 | 37421 |
| CDS | 37554 | 37605 |
| CDS | 37697 | 37767 |
| CDS | 37855 | 37914 |
| CDS | 38134 | 38214 |
| CDS | 38286 | 38384 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00291.24 | PALP | 122 | 231 |
| PF00291.24 | PALP | 234 | 326 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Sulfur metabolism | L-3-cyanoalanine synthase/ cysteine synthase [EC:2.5.1.47;EC:4.4.1.9] | ko00920 | K13034 |
| Cysteine and methionine metabolism | L-3-cyanoalanine synthase/ cysteine synthase [EC:2.5.1.47;EC:4.4.1.9] | ko00270 | K13034 |
| Cyanoamino acid metabolism | L-3-cyanoalanine synthase/ cysteine synthase [EC:2.5.1.47;EC:4.4.1.9] | ko00460 | K13034 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.