Annotation of co-expression genes

PH01003280G0180's details annotation

1.Annotation

ICBR annotation: NB-ARC domain containing protein, expressed

Blast result AT5G41210 : 3.80E-24
Blast annotation: glutathione S-transferase THETA 1

2.Location

Scaffold: PH01003280
Strand: +

RegionStartEnd
gene125584128767
mRNA125584128767
exon125584127135
exon127256127486
exon127664128767
CDS126846127135
CDS127256127486
CDS127664128135

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001487regulation of sequence-specific DNA binding transcription factor activity,
aromatic amino acid family metabolic process,
RLK-Pelle_LRR-II (from iTAK)
Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Basal_transcription_factors
Glutathione_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02798.19GST_N376
PF00931.21NB-ARC224277

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glutathione metabolismglutathione S-transferase [EC:2.5.1.18]ko00480K00799
Metabolism of xenobiotics by cytochrome P450glutathione S-transferase [EC:2.5.1.18]ko00980K00799
Drug metabolism - cytochrome P450glutathione S-transferase [EC:2.5.1.18]ko00982K00799

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0043531ADP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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