PH01003283G0220's details annotation
1.Annotation
ICBR annotation: receptor kinase, putative
Blast result AT3G47570 : 3.00E-109
Blast annotation: Leucine-rich repeat protein kinase family protein
2.Location
Scaffold: PH01003283
Strand: +
| Region | Start | End |
| gene | 131206 | 135068 |
| mRNA | 131206 | 135068 |
| exon | 131206 | 132814 |
| exon | 132969 | 133602 |
| exon | 133706 | 135068 |
| CDS | 131537 | 132814 |
| CDS | 132969 | 133602 |
| CDS | 133706 | 134061 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000251 | RLK-Pelle_LRR-XII-1 (from iTAK) endoplasmic reticulum, WRKY Transcription_Regulator(from PlantTFDB) oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, protein binding, |
| coexpression network | CFinderM000556 | regulation of transcription, DNA-dependent, protein phosphorylation, |
| coexpression network | CFinderM000968 | protein phosphorylation, protein serine/threonine kinase activity, transferase activity, transferring phosphorus-containing groups, protein kinase activity, regulation of transcription, DNA-dependent, ATP binding, RLK-Pelle_LRR-I-1 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 44 | 82 |
| PF13855.5 | LRR_8 | 136 | 196 |
| PF00069.24 | Pkinase | 466 | 675 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.