PH01003291G0100's details annotation
1.Annotation
ICBR annotation: phosphoglucomutase, putative, expressed
Blast result AT1G23190 : 0.00E+00
Blast annotation: Phosphoglucomutase/phosphomannomutase family protein
2.Location
Scaffold: PH01003291
Strand: -
| Region | Start | End |
| gene | 84470 | 93872 |
| mRNA | 84470 | 93872 |
| exon | 84470 | 84643 |
| exon | 84745 | 84861 |
| exon | 85037 | 85169 |
| exon | 85581 | 85657 |
| exon | 85907 | 86082 |
| exon | 86435 | 86516 |
| exon | 86602 | 86665 |
| exon | 88960 | 89055 |
| exon | 89142 | 89299 |
| exon | 89372 | 89471 |
| exon | 89558 | 89617 |
| exon | 89790 | 89890 |
| exon | 89987 | 90106 |
| exon | 90194 | 90256 |
| exon | 90372 | 90485 |
| exon | 91690 | 91745 |
| exon | 92079 | 92160 |
| exon | 93696 | 93872 |
| CDS | 84572 | 84643 |
| CDS | 84745 | 84861 |
| CDS | 85037 | 85169 |
| CDS | 85581 | 85657 |
| CDS | 85907 | 86082 |
| CDS | 86435 | 86516 |
| CDS | 86602 | 86665 |
| CDS | 88960 | 89055 |
| CDS | 89142 | 89299 |
| CDS | 89372 | 89471 |
| CDS | 89558 | 89617 |
| CDS | 89790 | 89890 |
| CDS | 89987 | 90106 |
| CDS | 90194 | 90256 |
| CDS | 90372 | 90485 |
| CDS | 91690 | 91745 |
| CDS | 92079 | 92160 |
| CDS | 93696 | 93776 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02878.15 | PGM_PMM_I | 17 | 164 |
| PF02879.15 | PGM_PMM_II | 200 | 309 |
| PF02880.15 | PGM_PMM_III | 317 | 440 |
| PF00408.19 | PGM_PMM_IV | 500 | 547 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycolysis / Gluconeogenesis | phosphoglucomutase [EC:5.4.2.2] | ko00010 | K01835 |
| Pentose phosphate pathway | phosphoglucomutase [EC:5.4.2.2] | ko00030 | K01835 |
| Galactose metabolism | phosphoglucomutase [EC:5.4.2.2] | ko00052 | K01835 |
| Starch and sucrose metabolism | phosphoglucomutase [EC:5.4.2.2] | ko00500 | K01835 |
| Amino sugar and nucleotide sugar metabolism | phosphoglucomutase [EC:5.4.2.2] | ko00520 | K01835 |
| Purine metabolism | phosphoglucomutase [EC:5.4.2.2] | ko00230 | K01835 |
| Streptomycin biosynthesis | phosphoglucomutase [EC:5.4.2.2] | ko00521 | K01835 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016868 | intramolecular transferase activity, phosphotransferases |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.