PH01003297G0190's details annotation
1.Annotation
ICBR annotation: upstream activation factor subunit spp27, putative, expressed
Blast result AT3G19080 : 1.70E-26
Blast annotation: SWIB complex BAF60b domain-containing protein
2.Location
Scaffold: PH01003297
Strand: -
| Region | Start | End |
| gene | 102554 | 105286 |
| mRNA | 102554 | 105286 |
| exon | 102554 | 102884 |
| exon | 104708 | 105286 |
| CDS | 102762 | 102884 |
| CDS | 104708 | 104917 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000872 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) ER to Golgi vesicle-mediated transport, regulation_of_cell_cycle regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SWI/SNF-BAF60b |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02201.17 | SWIB | 33 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.