PH01003305G0030's details annotation
1.Annotation
ICBR annotation: F-box family protein, putative, expressed
Blast result AT5G51380 : 2.00E-62
Blast annotation: RNI-like superfamily protein
2.Location
Scaffold: PH01003305
Strand: +
| Region | Start | End |
| gene | 38413 | 47998 |
| mRNA | 38413 | 47998 |
| exon | 38413 | 40400 |
| exon | 42939 | 43252 |
| exon | 43521 | 43719 |
| exon | 43867 | 44112 |
| exon | 44852 | 44892 |
| exon | 45083 | 45499 |
| exon | 46400 | 46615 |
| exon | 46692 | 46902 |
| exon | 47335 | 47416 |
| exon | 47542 | 47998 |
| CDS | 39370 | 40400 |
| CDS | 42939 | 43252 |
| CDS | 43521 | 43719 |
| CDS | 43867 | 44112 |
| CDS | 44852 | 44892 |
| CDS | 45083 | 45499 |
| CDS | 46400 | 46615 |
| CDS | 46692 | 46902 |
| CDS | 47335 | 47416 |
| CDS | 47542 | 47733 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000762 | Endocytosis phospholipid transport, regulation of ARF protein signal transduction, membrane coat, clathrin adaptor complex, |
| coexpression network | CFinderM000894 | regulation of ARF protein signal transduction, phospholipid transport, proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03763.12 | Remorin_C | 874 | 977 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.