PH01003305G0050's details annotation
1.Annotation
ICBR annotation: T-complex protein, putative, expressed
Blast result AT3G20050 : 2.70E-54
Blast annotation: T-complex protein 1 alpha subunit
2.Location
Scaffold: PH01003305
Strand: -
| Region | Start | End |
| gene | 52246 | 59183 |
| mRNA | 52246 | 59183 |
| exon | 52246 | 53348 |
| exon | 54351 | 54404 |
| exon | 55421 | 55516 |
| exon | 55605 | 55655 |
| exon | 55936 | 56022 |
| exon | 56107 | 56196 |
| exon | 56916 | 56980 |
| exon | 57103 | 59183 |
| CDS | 53178 | 53348 |
| CDS | 54351 | 54404 |
| CDS | 55421 | 55516 |
| CDS | 55605 | 55655 |
| CDS | 55936 | 56022 |
| CDS | 56107 | 56196 |
| CDS | 56916 | 56980 |
| CDS | 57103 | 57175 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00118.23 | Cpn60_TCP1 | 31 | 108 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006457 | protein folding |
| GO:0044267 | cellular protein metabolic process |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.