Annotation of co-expression genes

PH01003318G0040's details annotation

1.Annotation

ICBR annotation: MYB family transcription factor, putative, expressed

Blast result AT5G59430 : 1.50E-58
Blast annotation: telomeric repeat binding protein 1

2.Location

Scaffold: PH01003318
Strand: +

RegionStartEnd
gene2104128804
mRNA2104128804
exon2104122656
exon2274223549
exon2369523826
exon2411324192
exon2459524839
exon2506925102
exon2513325416
exon2547025533
exon2582525879
exon2625326371
exon2676926872
exon2754928804
CDS2257622656
CDS2274223549
CDS2369523826
CDS2411324192
CDS2459524839
CDS2506925102
CDS2513325416
CDS2547025533
CDS2582525879
CDS2625326371
CDS2676926872
CDS2754928032

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000465HB-KNOX Transcription_Regulator(from iTAK)
CK1_CK1 (from iTAK)
TALE Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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