Annotation of co-expression genes

PH01003318G0230's details annotation

1.Annotation

ICBR annotation: radical SAM enzyme, putative, expressed

Blast result AT2G39670 : 5.00E-154
Blast annotation: Radical SAM superfamily protein

2.Location

Scaffold: PH01003318
Strand: -

RegionStartEnd
gene134686137891
mRNA134686137891
exon134686135551
exon135643135779
exon135896136035
exon136268136371
exon136517136633
exon136743136829
exon136917137018
exon137191137288
exon137388137463
exon137571137891
CDS135384135551
CDS135643135779
CDS135896136035
CDS136268136371
CDS136517136633
CDS136743136829
CDS136917137018
CDS137191137288
CDS137388137463
CDS137571137723

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04055.20Radical_SAM141299
PF13394.5Fer4_14145234

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005737cytoplasm
GO:0006364rRNA processing
GO:0008173RNA methyltransferase activity
GO:0030488tRNA methylation
GO:0051536iron-sulfur cluster binding
GO:0070475rRNA base methylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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