PH01003320G0120's details annotation
1.Annotation
ICBR annotation: ATBET9, putative, expressed
Blast result AT3G01770 : 1.40E-75
Blast annotation: bromodomain and extraterminal domain protein 10
2.Location
Scaffold: PH01003320
Strand: -
| Region | Start | End |
| gene | 81870 | 94724 |
| mRNA | 81870 | 94724 |
| exon | 81870 | 83288 |
| exon | 83374 | 83516 |
| exon | 83593 | 83659 |
| exon | 83752 | 83864 |
| exon | 83960 | 84028 |
| exon | 84917 | 84956 |
| exon | 85104 | 85174 |
| exon | 85966 | 86010 |
| exon | 88479 | 88527 |
| exon | 88603 | 94724 |
| CDS | 83028 | 83288 |
| CDS | 83374 | 83516 |
| CDS | 83593 | 83659 |
| CDS | 83752 | 83864 |
| CDS | 83960 | 84028 |
| CDS | 84917 | 84956 |
| CDS | 85104 | 85174 |
| CDS | 85966 | 86010 |
| CDS | 88479 | 88527 |
| CDS | 88603 | 89661 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001160 | TLK (from iTAK) cell_cortex |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00439.24 | Bromodomain | 55 | 138 |
| PF17035.4 | BET | 271 | 333 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.