PH01003328G0070's details annotation
1.Annotation
ICBR annotation: exocyst complex component 6, putative, expressed
Blast result AT4G02350 : 0.00E+00
Blast annotation: exocyst complex component sec15B
2.Location
Scaffold: PH01003328
Strand: -
| Region | Start | End |
| gene | 60943 | 66150 |
| mRNA | 60943 | 66150 |
| exon | 60943 | 63380 |
| exon | 64833 | 66150 |
| CDS | 60977 | 63380 |
| CDS | 64833 | 65062 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000488 | microtubule, protein complex, structural constituent of cytoskeleton, protein polymerization, microtubule-based process, Phagosome GTP_catabolic_process GTPase activity, GTP binding, adenosylhomocysteinase activity, one-carbon metabolic process, vesicle docking involved in exocytosis, exocyst, Cysteine_and_methionine_metabolism ubiquitin thiolesterase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04091.11 | Sec15 | 532 | 841 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000145 | exocyst |
| GO:0006904 | vesicle docking involved in exocytosis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.