PH01003349G0010's details annotation
1.Annotation
ICBR annotation: SAP domain containing protein, expressed
Blast result AT4G39680 : 1.40E-83
Blast annotation: SAP domain-containing protein
2.Location
Scaffold: PH01003349
Strand: +
| Region | Start | End |
| gene | 8512 | 16029 |
| mRNA | 8512 | 16029 |
| exon | 8512 | 11245 |
| exon | 12040 | 12237 |
| exon | 12338 | 12489 |
| exon | 13032 | 13448 |
| exon | 14462 | 14575 |
| exon | 14780 | 14893 |
| exon | 15455 | 15589 |
| exon | 15650 | 16029 |
| CDS | 9922 | 11245 |
| CDS | 12040 | 12237 |
| CDS | 12338 | 12489 |
| CDS | 13032 | 13448 |
| CDS | 14462 | 14575 |
| CDS | 14780 | 14893 |
| CDS | 15455 | 15589 |
| CDS | 15650 | 15760 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001352 | RNA_transport rRNA_catabolic_process |
| coexpression network | CFinderM001433 | positive_regulation_of_autophagy rRNA_catabolic_process proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, ATP hydrolysis coupled proton transport, ribonuclease III activity, fructose-bisphosphate aldolase activity, double-stranded RNA binding, hydrogen ion transmembrane transporter activity, glycolysis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02037.26 | SAP | 14 | 42 |
| PF16294.4 | RSB_motif | 665 | 698 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | apoptotic chromatin condensation inducer in the nucleus | ko03041 | K12875 |
| RNA transport | apoptotic chromatin condensation inducer in the nucleus | ko03013 | K12875 |
| mRNA surveillance pathway | apoptotic chromatin condensation inducer in the nucleus | ko03015 | K12875 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.