PH01003355G0250's details annotation
1.Annotation
ICBR annotation: heparanase-like protein precursor, putative, expressed
Blast result AT5G34940 : 0.00E+00
Blast annotation: glucuronidase 3
2.Location
Scaffold: PH01003355
Strand: +
| Region | Start | End |
| gene | 142483 | 145514 |
| mRNA | 142483 | 145514 |
| exon | 142483 | 142844 |
| exon | 142928 | 142964 |
| exon | 143060 | 143243 |
| exon | 143335 | 143483 |
| exon | 143738 | 143971 |
| exon | 144051 | 144240 |
| exon | 144319 | 144444 |
| exon | 144670 | 144769 |
| exon | 145003 | 145514 |
| CDS | 142614 | 142844 |
| CDS | 142928 | 142964 |
| CDS | 143060 | 143243 |
| CDS | 143335 | 143483 |
| CDS | 143738 | 143971 |
| CDS | 144051 | 144240 |
| CDS | 144319 | 144444 |
| CDS | 144670 | 144769 |
| CDS | 145003 | 145359 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH79 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03662.13 | Glyco_hydro_79n | 34 | 348 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.