PH01003364G0030's details annotation
1.Annotation
ICBR annotation: CAMK_KIN1/SNF1/Nim1_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Blast result AT5G45820 : 2.00E-161
Blast annotation: CBL-interacting protein kinase 20
2.Location
Scaffold: PH01003364
Strand: +
| Region | Start | End |
| gene | 50011 | 52266 |
| mRNA | 50011 | 52266 |
| exon | 50011 | 50122 |
| exon | 50462 | 50628 |
| exon | 50781 | 52266 |
| CDS | 50094 | 50122 |
| CDS | 50462 | 50628 |
| CDS | 50781 | 52141 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000474 | CAMK_CAMKL-CHK1 (from iTAK) eukaryotic translation initiation factor 3 complex, |
| coexpression network | CFinderM000966 | TKL-Pl-1 (from iTAK) CMGC_CDK-CRK7-CDK9 (from iTAK) protein phosphorylation, chloride transport, CAMK_CAMKL-CHK1 (from iTAK) transferase activity, transferring phosphorus-containing groups, voltage-gated chloride channel activity, protein kinase activity, ion channel activity, ATP binding, |
| coexpression network | CFinderM001179 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 76 | 330 |
| PF03822.13 | NAF | 380 | 437 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0007165 | signal transduction |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.