Annotation of co-expression genes

PH01003366G0140's details annotation

1.Annotation

ICBR annotation: helicase SEN1, putative, expressed

Blast result AT4G30100 : 0.00E+00
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.Location

Scaffold: PH01003366
Strand: +

RegionStartEnd
gene7262885813
mRNA7262885813
exon7262877383
exon7790478092
exon7821578271
exon7842278590
exon7931479446
exon7952881303
exon8141481802
exon8307883187
exon8334783395
exon8395284061
exon8417284322
exon8437984571
exon8519585272
exon8559685813
CDS7599777383
CDS7790478092
CDS7821578271
CDS7842278590
CDS7931479446
CDS7952881303
CDS8141481802
CDS8307883187
CDS8334783395
CDS8395284061
CDS8417284322
CDS8437984571
CDS8519585272
CDS8559685727

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000300nuclear mRNA splicing, via spliceosome,
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
Lysine_biosynthesis
spliceosomal complex,
lyase activity,
snRNA_binding
rRNA binding,
metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13086.5AAA_116891039
PF13087.5AAA_1210461242

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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