PH01003421G0060's details annotation
1.Annotation
ICBR annotation: OsFBT5 - F-box and tubby domain containing protein, expressed
Blast result AT2G47900 : 4.00E-155
Blast annotation: tubby like protein 3
2.Location
Scaffold: PH01003421
Strand: +
| Region | Start | End |
| gene | 36693 | 42865 |
| mRNA | 36693 | 42865 |
| exon | 36693 | 37791 |
| exon | 40233 | 40320 |
| exon | 40412 | 40541 |
| exon | 40974 | 41153 |
| exon | 41527 | 42865 |
| CDS | 37456 | 37791 |
| CDS | 40233 | 40320 |
| CDS | 40412 | 40541 |
| CDS | 40974 | 41153 |
| CDS | 41527 | 41995 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TUB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 48 | 97 |
| PF01167.17 | Tub | 112 | 395 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.