PH01003425G0180's details annotation
1.Annotation
ICBR annotation: PPR repeat containing protein, expressed
Blast result AT3G04130 : 5.00E-125
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01003425
Strand: +
| Region | Start | End |
| gene | 137292 | 140493 |
| mRNA | 137292 | 140493 |
| exon | 137292 | 140493 |
| CDS | 138924 | 140426 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 118 | 147 |
| PF01535.19 | PPR | 187 | 208 |
| PF13812.5 | PPR_3 | 243 | 297 |
| PF13812.5 | PPR_3 | 307 | 336 |
| PF13041.5 | PPR_2 | 361 | 403 |
| PF12854.6 | PPR_1 | 431 | 459 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.