PH01003437G0040's details annotation
1.Annotation
ICBR annotation: 1,3-beta-glucan synthase component domain containing protein, expressed
Blast result AT2G13680 : 0.00E+00
Blast annotation: callose synthase 5
2.Location
Scaffold: PH01003437
Strand: -
| Region | Start | End |
| gene | 14008 | 32362 |
| mRNA | 14008 | 32362 |
| exon | 14008 | 15544 |
| exon | 15806 | 15991 |
| exon | 16098 | 16148 |
| exon | 16305 | 17102 |
| exon | 17214 | 17443 |
| exon | 17521 | 17594 |
| exon | 17633 | 17725 |
| exon | 18032 | 18115 |
| exon | 18203 | 18318 |
| exon | 18391 | 18510 |
| exon | 18568 | 18730 |
| exon | 19155 | 19270 |
| exon | 19343 | 19462 |
| exon | 19591 | 19657 |
| exon | 19923 | 20112 |
| exon | 20200 | 20268 |
| exon | 20349 | 20474 |
| exon | 20611 | 20681 |
| exon | 21353 | 21504 |
| exon | 21572 | 21695 |
| exon | 21788 | 21882 |
| exon | 22018 | 22141 |
| exon | 23264 | 23424 |
| exon | 23516 | 23600 |
| exon | 23683 | 23777 |
| exon | 24706 | 24792 |
| exon | 24926 | 24975 |
| exon | 25054 | 25135 |
| exon | 25208 | 25220 |
| exon | 25346 | 25398 |
| exon | 25924 | 26258 |
| exon | 26930 | 27044 |
| exon | 27354 | 27441 |
| exon | 27525 | 27601 |
| exon | 27674 | 27811 |
| exon | 28963 | 29088 |
| exon | 29196 | 29306 |
| exon | 29406 | 29502 |
| exon | 29594 | 29715 |
| exon | 30970 | 31070 |
| exon | 31716 | 32362 |
| CDS | 15314 | 15544 |
| CDS | 15806 | 15991 |
| CDS | 16098 | 16148 |
| CDS | 16305 | 17102 |
| CDS | 17214 | 17443 |
| CDS | 17521 | 17594 |
| CDS | 17633 | 17725 |
| CDS | 18032 | 18115 |
| CDS | 18203 | 18318 |
| CDS | 18391 | 18510 |
| CDS | 18568 | 18730 |
| CDS | 19155 | 19270 |
| CDS | 19343 | 19462 |
| CDS | 19591 | 19657 |
| CDS | 19923 | 20112 |
| CDS | 20200 | 20268 |
| CDS | 20349 | 20474 |
| CDS | 20611 | 20681 |
| CDS | 21353 | 21504 |
| CDS | 21572 | 21695 |
| CDS | 21788 | 21882 |
| CDS | 22018 | 22141 |
| CDS | 23264 | 23424 |
| CDS | 23516 | 23600 |
| CDS | 23683 | 23777 |
| CDS | 24706 | 24792 |
| CDS | 24926 | 24975 |
| CDS | 25054 | 25135 |
| CDS | 25208 | 25220 |
| CDS | 25346 | 25398 |
| CDS | 25924 | 26258 |
| CDS | 26930 | 27044 |
| CDS | 27354 | 27441 |
| CDS | 27525 | 27601 |
| CDS | 27674 | 27811 |
| CDS | 28963 | 29088 |
| CDS | 29196 | 29306 |
| CDS | 29406 | 29502 |
| CDS | 29594 | 29715 |
| CDS | 30970 | 31070 |
| CDS | 31716 | 31992 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04652.15 | Vta1 | 71 | 203 |
| PF14288.5 | FKS1_dom1 | 281 | 360 |
| PF02364.14 | Glucan_synthase | 869 | 927 |
| PF02364.14 | Glucan_synthase | 947 | 1156 |
| PF02364.14 | Glucan_synthase | 1346 | 1684 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000148 | 1,3-beta-D-glucan synthase complex |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
| GO:0006075 | (1->3)-beta-D-glucan biosynthetic process |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.