PH01003437G0140's details annotation
1.Annotation
ICBR annotation: LIM domain-containing protein, putative, expressed
Blast result AT4G36860 : 0.00E+00
Blast annotation: LIM domain-containing protein
2.Location
Scaffold: PH01003437
Strand: +
| Region | Start | End |
| gene | 81403 | 93380 |
| mRNA | 81403 | 93380 |
| exon | 81403 | 81602 |
| exon | 81731 | 81781 |
| exon | 82075 | 82096 |
| exon | 82220 | 82334 |
| exon | 82425 | 82457 |
| exon | 84202 | 84308 |
| exon | 84412 | 84483 |
| exon | 84561 | 84923 |
| exon | 86351 | 86505 |
| exon | 88117 | 88207 |
| exon | 89014 | 89167 |
| exon | 90158 | 90278 |
| exon | 90347 | 90430 |
| exon | 90846 | 90929 |
| exon | 91049 | 91261 |
| exon | 91348 | 91410 |
| exon | 91523 | 91638 |
| exon | 91976 | 92037 |
| exon | 92823 | 93380 |
| CDS | 81597 | 81602 |
| CDS | 81731 | 81781 |
| CDS | 82075 | 82096 |
| CDS | 82220 | 82334 |
| CDS | 82425 | 82457 |
| CDS | 84202 | 84308 |
| CDS | 84412 | 84483 |
| CDS | 84561 | 84923 |
| CDS | 86351 | 86505 |
| CDS | 88117 | 88207 |
| CDS | 89014 | 89167 |
| CDS | 90158 | 90278 |
| CDS | 90347 | 90430 |
| CDS | 90846 | 90929 |
| CDS | 91049 | 91261 |
| CDS | 91348 | 91410 |
| CDS | 91523 | 91638 |
| CDS | 91976 | 92037 |
| CDS | 92823 | 93151 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12850.6 | Metallophos_2 | 6 | 164 |
| PF00412.21 | LIM | 392 | 446 |
| PF12315.7 | DA1-like | 529 | 741 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.