Annotation of co-expression genes

PH01003446G0140's details annotation

1.Annotation

ICBR annotation: armadillo/beta-catenin repeat family protein, putative, expressed

Blast result AT3G03440 : 2.10E-95
Blast annotation: ARM repeat superfamily protein

2.Location

Scaffold: PH01003446
Strand: +

RegionStartEnd
gene8119585508
mRNA8119585508
exon8119582516
exon8452885508
CDS8223382516
CDS8452885329

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000320nicotinate phosphoribosyltransferase activity,
nicotinate-nucleotide diphosphorylase (carboxylating) activity,
adenylylsulfate_kinase_activity
nicotinate nucleotide salvage,
omega_peptidase_activity
SNARE_interactions_in_vesicular_transport
Nicotinate_and_nicotinamide_metabolism
Nitrogen_metabolism
sulfate assimilation,
NAD biosynthetic process,
nucleoside-triphosphatase activity,
metal ion transmembrane transporter activity,
ER to Golgi vesicle-mediated transport,
magnesium_ion_transport
transmembrane transport,
cis-Golgi network,
Golgi membrane,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00514.22Arm94132

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005488binding
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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