PH01003475G0070's details annotation
1.Annotation
ICBR annotation: dehydrogenase, putative, expressed
Blast result AT5G24760 : 3.00E-173
Blast annotation: GroES-like zinc-binding dehydrogenase family protein
2.Location
Scaffold: PH01003475
Strand: -
| Region | Start | End |
| gene | 43308 | 46890 |
| mRNA | 43308 | 46890 |
| exon | 43308 | 43916 |
| exon | 44066 | 44227 |
| exon | 44324 | 44419 |
| exon | 44839 | 44900 |
| exon | 44977 | 45052 |
| exon | 45134 | 45216 |
| exon | 45386 | 45708 |
| exon | 45798 | 45844 |
| exon | 45938 | 46074 |
| exon | 46162 | 46890 |
| CDS | 43791 | 43916 |
| CDS | 44066 | 44227 |
| CDS | 44324 | 44419 |
| CDS | 44839 | 44900 |
| CDS | 44977 | 45052 |
| CDS | 45134 | 45216 |
| CDS | 45386 | 45708 |
| CDS | 45798 | 45844 |
| CDS | 45938 | 46074 |
| CDS | 46162 | 46207 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08240.11 | ADH_N | 40 | 164 |
| PF00107.25 | ADH_zinc_N | 209 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycolysis / Gluconeogenesis | alcohol dehydrogenase [EC:1.1.1.1] | ko00010 | K00001 |
| Fatty acid metabolism | alcohol dehydrogenase [EC:1.1.1.1] | ko01212 | K00001 |
| Tyrosine metabolism | alcohol dehydrogenase [EC:1.1.1.1] | ko00350 | K00001 |
| Retinol metabolism | alcohol dehydrogenase [EC:1.1.1.1] | ko00830 | K00001 |
| Chloroalkane and chloroalkene degradation | alcohol dehydrogenase [EC:1.1.1.1] | ko00625 | K00001 |
| Naphthalene degradation | alcohol dehydrogenase [EC:1.1.1.1] | ko00626 | K00001 |
| Metabolism of xenobiotics by cytochrome P450 | alcohol dehydrogenase [EC:1.1.1.1] | ko00980 | K00001 |
| Drug metabolism - cytochrome P450 | alcohol dehydrogenase [EC:1.1.1.1] | ko00982 | K00001 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.