PH01003480G0150's details annotation
1.Annotation
ICBR annotation: tRNA-dihydrouridine synthase, putative, expressed
Blast result AT3G49640 : 1.20E-14
Blast annotation: Aldolase-type TIM barrel family protein
2.Location
Scaffold: PH01003480
Strand: -
| Region | Start | End |
| gene | 67703 | 70030 |
| mRNA | 67703 | 70030 |
| exon | 67703 | 68145 |
| exon | 68562 | 68729 |
| exon | 68779 | 70030 |
| CDS | 68112 | 68145 |
| CDS | 68562 | 68729 |
| CDS | 68779 | 68906 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000631 | tRNA dihydrouridine synthase activity, tRNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01207.16 | Dus | 65 | 99 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008033 | tRNA processing |
| GO:0017150 | tRNA dihydrouridine synthase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.