Annotation of co-expression genes

PH01003494G0140's details annotation

1.Annotation

ICBR annotation: SET domain containing protein, expressed

Blast result AT2G44150 : 1.90E-49
Blast annotation: histone-lysine N-methyltransferase ASHH3

2.Location

Scaffold: PH01003494
Strand: +

RegionStartEnd
gene102807107033
mRNA102807107033
exon102807104049
exon104982105060
exon105200105371
exon105494105574
exon106040106094
exon106260106361
exon106454106519
exon106577107033
CDS103891104049
CDS104982105060
CDS105200105371
CDS105494105574
CDS106040106094
CDS106260106361
CDS106454106519
CDS106577106642

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000780Lysine_degradation
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
SET Transcription_Regulator(from iTAK)
endoplasmic reticulum membrane,
GPI anchor biosynthetic process,
protein refolding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SET

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00856.27SET58163

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Lysine degradationhistone-lysine N-methyltransferase SETD2 [EC:2.1.1.43]ko00310K11423

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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