PH01003497G0050's details annotation
1.Annotation
ICBR annotation: NBS-LRR disease resistance protein, putative, expressed
Blast result AT3G14470 : 1.90E-87
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01003497
Strand: +
| Region | Start | End |
| gene | 52385 | 62928 |
| mRNA | 52385 | 62928 |
| exon | 52385 | 52679 |
| exon | 53191 | 53357 |
| exon | 54523 | 54622 |
| exon | 56642 | 56950 |
| exon | 60033 | 62928 |
| CDS | 52623 | 52679 |
| CDS | 53191 | 53357 |
| CDS | 54523 | 54622 |
| CDS | 56642 | 56950 |
| CDS | 60033 | 62531 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001565 | transferase activity, transferring glycosyl groups, Smc5-Smc6_complex |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 315 | 579 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.