PH01003559G0020's details annotation
1.Annotation
ICBR annotation: salt stress root protein RS1, putative, expressed
Blast result AT4G20260 : 2.20E-28
Blast annotation: plasma-membrane associated cation-binding protein 1
2.Location
Scaffold: PH01003559
Strand: +
| Region | Start | End |
| gene | 2850 | 5725 |
| mRNA | 2850 | 5725 |
| exon | 2850 | 3945 |
| exon | 4035 | 4124 |
| exon | 4390 | 4474 |
| exon | 4593 | 5725 |
| CDS | 3835 | 3945 |
| CDS | 4035 | 4124 |
| CDS | 4390 | 4474 |
| CDS | 4593 | 4981 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05558.11 | DREPP | 1 | 200 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.