PH01003565G0070's details annotation
1.Annotation
ICBR annotation: vacuolar ATP synthase, putative, expressed
Blast result AT1G19910 : 8.30E-46
Blast annotation: ATPase, F0/V0 complex, subunit C protein
2.Location
Scaffold: PH01003565
Strand: +
| Region | Start | End |
| gene | 49257 | 50799 |
| mRNA | 49257 | 50799 |
| exon | 49257 | 50799 |
| CDS | 49508 | 49915 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000624 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, HB-other Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00137.20 | ATP-synt_C | 18 | 77 |
| PF00137.20 | ATP-synt_C | 98 | 131 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015078 | hydrogen ion transmembrane transporter activity |
| GO:0015991 | ATP hydrolysis coupled proton transport |
| GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain |
| GO:0033179 | proton-transporting V-type ATPase, V0 domain |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.