PH01003567G0120's details annotation
1.Annotation
ICBR annotation: transporter, monovalent cation:proton antiporter-2 family, putative, expressed
Blast result AT1G79610 : 8.80E-37
Blast annotation: Na+/H+ antiporter 6
2.Location
Scaffold: PH01003567
Strand: +
| Region | Start | End |
| gene | 83218 | 94664 |
| mRNA | 83218 | 94664 |
| exon | 83218 | 85258 |
| exon | 85972 | 86014 |
| exon | 87490 | 87914 |
| exon | 88224 | 88255 |
| exon | 90236 | 90334 |
| exon | 90866 | 90905 |
| exon | 91994 | 92103 |
| exon | 92266 | 92355 |
| exon | 93410 | 93519 |
| exon | 93716 | 93807 |
| exon | 93891 | 94664 |
| CDS | 85141 | 85258 |
| CDS | 85972 | 86014 |
| CDS | 87490 | 87914 |
| CDS | 88224 | 88255 |
| CDS | 90236 | 90334 |
| CDS | 90866 | 90905 |
| CDS | 91994 | 92103 |
| CDS | 92266 | 92355 |
| CDS | 93410 | 93519 |
| CDS | 93716 | 93807 |
| CDS | 93891 | 93940 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000237 | solute:hydrogen antiporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0015299 | solute:hydrogen antiporter activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.