PH01003574G0050's details annotation
1.Annotation
ICBR annotation: KH domain-containing protein, putative, expressed
Blast result AT5G15270 : 1.00E-149
Blast annotation: RNA-binding KH domain-containing protein
2.Location
Scaffold: PH01003574
Strand: -
| Region | Start | End |
| gene | 27820 | 31564 |
| mRNA | 27820 | 31564 |
| exon | 27820 | 28234 |
| exon | 28331 | 28597 |
| exon | 28681 | 28938 |
| exon | 29033 | 29455 |
| exon | 29809 | 30384 |
| exon | 30646 | 30683 |
| exon | 31145 | 31564 |
| CDS | 28172 | 28234 |
| CDS | 28331 | 28597 |
| CDS | 28681 | 28938 |
| CDS | 29033 | 29455 |
| CDS | 29809 | 30384 |
| CDS | 30646 | 30683 |
| CDS | 31145 | 31160 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00013.28 | KH_1 | 61 | 114 |
| PF00013.28 | KH_1 | 161 | 225 |
| PF00013.28 | KH_1 | 301 | 349 |
| PF00013.28 | KH_1 | 385 | 452 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.