PH01003576G0140's details annotation
1.Annotation
ICBR annotation: 3-isopropylmalate dehydratase small subunit 2, putative, expressed
Blast result AT2G43090 : 5.10E-72
Blast annotation: Aconitase/3-isopropylmalate dehydratase protein
2.Location
Scaffold: PH01003576
Strand: +
| Region | Start | End |
| gene | 81890 | 83190 |
| mRNA | 81890 | 83190 |
| exon | 81890 | 83190 |
| CDS | 82398 | 83135 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00694.18 | Aconitase_C | 126 | 181 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| C5-Branched dibasic acid metabolism | 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33;EC:4.2.1.35] | ko00660 | K01704 |
| 292 Valine, leucine and isoleucine biosynthesis | 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33;EC:4.2.1.35] | K01704 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003861 | 3-isopropylmalate dehydratase activity |
| GO:0008152 | metabolic process |
| GO:0009098 | leucine biosynthetic process |
| GO:0009316 | 3-isopropylmalate dehydratase complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.