PH01003578G0030's details annotation
1.Annotation
ICBR annotation: amidase family protein, putative, expressed
Blast result AT5G64440 : 1.20E-57
Blast annotation: fatty acid amide hydrolase
2.Location
Scaffold: PH01003578
Strand: -
| Region | Start | End |
| gene | 21527 | 29364 |
| mRNA | 21527 | 29364 |
| exon | 21527 | 21865 |
| exon | 22189 | 22301 |
| exon | 25959 | 26106 |
| exon | 26569 | 26646 |
| exon | 27634 | 27763 |
| exon | 28040 | 28267 |
| exon | 28999 | 29108 |
| exon | 29207 | 29364 |
| CDS | 21780 | 21865 |
| CDS | 22189 | 22301 |
| CDS | 25959 | 26106 |
| CDS | 26569 | 26646 |
| CDS | 27634 | 27763 |
| CDS | 28040 | 28267 |
| CDS | 28999 | 29108 |
| CDS | 29207 | 29306 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000793 | |
| coexpression network | CFinderM000895 | protein kinase C-activating G-protein coupled receptor signaling pathway, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01425.20 | Amidase | 170 | 302 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.