PH01003582G0150's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G25720 : 9.80E-18
Blast annotation: -
2.Location
Scaffold: PH01003582
Strand: +
| Region | Start | End |
| gene | 92670 | 94241 |
| mRNA | 92670 | 94241 |
| exon | 92670 | 94241 |
| CDS | 93305 | 93682 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001185 | NF-YC Transcription_Regulator(from PlantTFDB) mediator complex, CCAAT-binding factor complex, GATA Transcription_Regulator(from PlantTFDB) C2C2-GATA Transcription_Regulator(from iTAK) Endocytosis RNA_polymerase_II_transcription_cofactor_activity sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, vesicle docking involved in exocytosis, regulation of transcription from RNA polymerase II promoter, regulation of transcription, DNA-dependent, vesicle-mediated transport, protein_heterodimerization_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.