Gene details

Annotation of co-expression genes

PH01003590G0060's details annotation

1.Annotation

ICBR annotation: ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed

Blast result AT5G50920 : 0.00E+00
Blast annotation: CLPC homologue 1

2.Location

Scaffold: PH01003590
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000958	Ubiquitin_mediated_proteolysis cellular protein modification process, intracellular, ubiquitin-protein ligase activity, Fatty_acid_biosynthesis 3-oxoacyl-[acyl-carrier-protein] synthase activity,
coexpression network	CFinderM001074	SAGA complex, transcription cofactor activity, cellular protein modification process, Ubiquitin_mediated_proteolysis ubiquitin-protein ligase activity, 3-oxoacyl-[acyl-carrier-protein] synthase activity, Fatty_acid_biosynthesis intracellular, protein metabolic process, lipid biosynthetic process, binding,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0000166	nucleotide binding
GO:0005515	protein binding
GO:0005524	ATP binding
GO:0017111	nucleoside-triphosphatase activity
GO:0019538	protein metabolic process

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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