PH01003601G0060's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT1G17370 : 1.00E-143
Blast annotation: oligouridylate binding protein 1B
2.Location
Scaffold: PH01003601
Strand: +
| Region | Start | End |
| gene | 38492 | 45974 |
| mRNA | 38492 | 45974 |
| exon | 38492 | 39696 |
| exon | 41300 | 41361 |
| exon | 41446 | 41561 |
| exon | 41607 | 41749 |
| exon | 42955 | 43031 |
| exon | 43124 | 43185 |
| exon | 43321 | 43408 |
| exon | 43556 | 43631 |
| exon | 43719 | 43749 |
| exon | 43850 | 43969 |
| exon | 44309 | 44391 |
| exon | 44498 | 44671 |
| exon | 45092 | 45974 |
| CDS | 39478 | 39696 |
| CDS | 41300 | 41361 |
| CDS | 41446 | 41561 |
| CDS | 41607 | 41749 |
| CDS | 42955 | 43031 |
| CDS | 43124 | 43185 |
| CDS | 43321 | 43408 |
| CDS | 43556 | 43631 |
| CDS | 43719 | 43749 |
| CDS | 43850 | 43969 |
| CDS | 44309 | 44391 |
| CDS | 44498 | 44671 |
| CDS | 45092 | 45376 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001099 | HSF Transcription_Regulator(from PlantTFDB) cellular process, |
| coexpression network | CFinderM001479 | GT31 GlycosylTransferases CAMK_CDPK (from iTAK) protein glycosylation, |
| coexpression network | CFinderM001485 | HSF Transcription_Regulator(from PlantTFDB) myosin complex, tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM001486 | endoplasmic reticulum, protein folding, Protein_processing_in_endoplasmic_reticulum unfolded protein binding, HSF Transcription_Regulator(from PlantTFDB) calcium ion binding, Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 147 | 212 |
| PF00076.21 | RRM_1 | 231 | 301 |
| PF00076.21 | RRM_1 | 351 | 417 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.