PH01003639G0120's details annotation
1.Annotation
ICBR annotation: UPF0041 domain containing protein, putative, expressed
Blast result AT4G22310 : 5.00E-49
Blast annotation: Uncharacterised protein family (UPF0041)
2.Location
Scaffold: PH01003639
Strand: +
| Region | Start | End |
| gene | 99095 | 102184 |
| mRNA | 99095 | 102184 |
| exon | 99095 | 100346 |
| exon | 101192 | 101265 |
| exon | 101355 | 102184 |
| CDS | 100257 | 100346 |
| CDS | 101192 | 101265 |
| CDS | 101355 | 101406 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000430 | unfolded protein binding, protein folding, |
| coexpression network | CFinderM000648 | methylmalonate-semialdehyde dehydrogenase (acylating) activity, oxidoreductase activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, |
| coexpression network | CFinderM000707 | CAMK_CDPK (from iTAK) |
| coexpression network | CFinderM000713 | signal peptide processing, tRNA modification, tRNA_guanylyltransferase_activity F-actin capping protein complex, actin cytoskeleton organization, WASH_complex |
| coexpression network | CFinderM001203 | SNARE_interactions_in_vesicular_transport ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001578 | myosin complex, protein folding, motor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03650.12 | MPC | 5 | 104 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.