Annotation of co-expression genes

PH01003641G0110's details annotation

1.Annotation

ICBR annotation: receptor-like protein kinase 5 precursor, putative, expressed

Blast result AT1G35710 : 0
Blast annotation: Protein kinase family protein with leucine-rich repeat domain

2.Location

Scaffold: PH01003641
Strand: +

RegionStartEnd
gene97696108799
mRNA97696108799
exon97696101595
exon102012103004
exon103897104217
exon105201105304
exon108050108799
CDS99522101595
CDS102012103004
CDS103897104217
CDS105201105304
CDS108050108340

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001152protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
protein kinase activity,
protein tyrosine kinase activity,
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_LRR-XI-1 (from iTAK)
WRKY Transcription_Regulator(from PlantTFDB)
RLK-Pelle_WAK (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_22965
PF13855.5LRR_8286346
PF13855.5LRR_8382442
PF13855.5LRR_8455514
PF13855.5LRR_8695738
PF00069.24Pkinase8521113
PF07727.13RVT_211651241

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004713protein tyrosine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.