PH01003644G0100's details annotation
1.Annotation
ICBR annotation: monocopper oxidase, putative, expressed
Blast result AT4G22010 : 0.00E+00
Blast annotation: SKU5 similar 4
2.Location
Scaffold: PH01003644
Strand: +
| Region | Start | End |
| gene | 55110 | 60819 |
| mRNA | 55110 | 60819 |
| exon | 55110 | 57008 |
| exon | 57133 | 57242 |
| exon | 58396 | 58666 |
| exon | 58771 | 58873 |
| exon | 58970 | 59318 |
| exon | 59775 | 60140 |
| exon | 60240 | 60318 |
| exon | 60490 | 60819 |
| CDS | 56865 | 57008 |
| CDS | 57133 | 57242 |
| CDS | 58396 | 58666 |
| CDS | 58771 | 58873 |
| CDS | 58970 | 59318 |
| CDS | 59775 | 60140 |
| CDS | 60240 | 60318 |
| CDS | 60490 | 60702 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07732.14 | Cu-oxidase_3 | 38 | 148 |
| PF00394.21 | Cu-oxidase | 161 | 297 |
| PF07731.13 | Cu-oxidase_2 | 384 | 515 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.