PH01003655G0130's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT1G08190 : 0.00E+00
Blast annotation: vacuolar protein sorting 41
2.Location
Scaffold: PH01003655
Strand: +
| Region | Start | End |
| gene | 73317 | 80984 |
| mRNA | 73317 | 80984 |
| exon | 73317 | 74330 |
| exon | 75101 | 75373 |
| exon | 75457 | 75636 |
| exon | 76091 | 76354 |
| exon | 76436 | 76568 |
| exon | 76669 | 76759 |
| exon | 77198 | 77300 |
| exon | 77577 | 77680 |
| exon | 77970 | 78063 |
| exon | 78147 | 78302 |
| exon | 78400 | 78462 |
| exon | 78579 | 78644 |
| exon | 78855 | 79055 |
| exon | 79189 | 79266 |
| exon | 79350 | 79469 |
| exon | 79576 | 79656 |
| exon | 79770 | 79855 |
| exon | 80274 | 80398 |
| exon | 80545 | 80984 |
| CDS | 74073 | 74330 |
| CDS | 75101 | 75373 |
| CDS | 75457 | 75636 |
| CDS | 76091 | 76354 |
| CDS | 76436 | 76568 |
| CDS | 76669 | 76759 |
| CDS | 77198 | 77300 |
| CDS | 77577 | 77680 |
| CDS | 77970 | 78063 |
| CDS | 78147 | 78302 |
| CDS | 78400 | 78462 |
| CDS | 78579 | 78644 |
| CDS | 78855 | 79055 |
| CDS | 79189 | 79266 |
| CDS | 79350 | 79469 |
| CDS | 79576 | 79656 |
| CDS | 79770 | 79855 |
| CDS | 80274 | 80398 |
| CDS | 80545 | 80672 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00637.19 | Clathrin | 637 | 754 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0006886 | intracellular protein transport |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.